There's a new minimap2 release with ONT specific accurate long reads setting. Looking forward to giving it a test run!
github.com/lh3/minimap2/releas…
Release Minimap2-2.27 (r1193) · lh3/minimap2
Notable changes to minimap2: New feature: added the lr:hq preset for accurate long reads at ~1% error rate. This was suggested by Oxford Nanopore developers (#1127). It is not clear if this prese...GitHub