PhylteR: efficient identification of outlier sequences in phylogenomic datasets.
PhylteR can automatically identify sequences likely to be hidden paralogs or horizontally transferred genes in very large datasets. Removing those sequences therefore reduces noise in downstream analyses.
Available as an R package on CRAN or as docker and singularity images.
Package:
https://cran.r-project.org/web/packages/phylter/index.html
Paper: