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Items tagged with: scrna
I'm thrilled to announce a new preprint from our lab, with in depth analyses showing that Seurat and Scanpy give drastically different results for ostensibly the same data analysis tasks: https://www.biorxiv.org/content/10.1101/2024.04.04.588111v1 #rstats #python #scrna #bioinformatics
The impact of package selection and versioning on single-cell RNA-seq analysis
Standard single-cell RNA-sequencing analysis (scRNA-seq) workflows consist of converting raw read data into cell-gene count matrices through sequence alignment, followed by analyses including filtering, highly variable gene selection, dimensionality …bioRxiv
