Control data conversions in Excel for Windows and Mac

Based on your feedback, we've improved the Automatic Data Conversion settings, and made them also available in Excel for Mac.

Analysis of Prokaryotic Pangenomes

ONLINE, 15-17 April 2024 To foster international participation, this course will be held online

Doctoral student in in structural and functional protein bioinformatics

Description of the workplace  In the Atkinson lab we are interested in making discoveries about protein function and structure, with a focus on bacterial immune system components that protect against

Robert M. Waterhouse

Waterhouse Group Arthropoda Assembly Assessment Catalogue | DrosOMA Orthology Database | GO-Figure! Gene Ontology Visualisation

Automated Bioinformatics Analysis via AutoBA

With the fast-growing and evolving omics data, the demand for streamlined and adaptable tools to handle the analysis continues to grow.

GitHub - arvestad/alv: A console-based alignment viewer

A console-based alignment viewer. Contribute to arvestad/alv development by creating an account on GitHub.

GitHub - ablab/spades: SPAdes Genome Assembler

SPAdes Genome Assembler. Contribute to ablab/spades development by creating an account on GitHub.

Building trees with SKA

SKA is a tool for comparing small and highly similar genomes using split k-mers. This guide will explain how to use SKA to build a phylogenetic tree for different Escherichia coli lineages in a few minutes.

Profiling the Expression of Transportome Genes in cancer: A systematic approach

The transportome, the -omic layer encompassing all Ion Channels and Transporters (ICTs), is crucial for cell physiology. It is therefore reasonable to hypothesize a role of the transportome in disease, and in particular in cancer.

The Handbook

The Handbook # Welcome to Hedmad’s Handbook of Nice and Practical Tips! 🎉 This handbook aims to: Collect useful and practical day-to-day tips on how to conduct bioinformatics analyses; Set standards for data formats, workflows, project structure and …

miniBUSCO: a faster and more accurate reimplementation of BUSCO

Motivation Assembly completeness evaluation of genome assembly is a critical assessment of the accuracy and reliability of genomic data. An incomplete assembly can lead to errors in gene predictions, annotation, and other downstream analyses.

Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses - ISME Communications

ISME Communications - Accounting for 16S rRNA copy number prediction uncertainty and its implications in bacterial diversity analyses

Distribution and diversity of ‘Tectomicrobia’, a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites - ISME Communications

ISME Communications - Distribution and diversity of ‘Tectomicrobia’, a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites

Master or PhD positions

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

The best practice for microbiome analysis using R

Abstract. With the gradual maturity of sequencing technology, many microbiome studies have published, driving the emergence and advance of related analysis tool

Every base everywhere all at once: pangenomics comes of age

Multi-genome assemblies called pangenomes can capture genetic diversity in a species, but researchers are still working out how best to build and explore them.

JASPER: A fast genome polishing tool that improves accuracy of genome assemblies

Advances in long-read sequencing technologies have dramatically improved the contiguity and completeness of genome assemblies.

A field-wide assessment of differential expression profiling by high-throughput sequencing reveals widespread bias

A large-scale examination of differential RNA expression study datasets submitted to the NCBI GEO repository from 2008-2020 reveals widespread bias, as assessed by the distribution of p values and estimated proportions of true null hypotheses.

An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS

In Italian universities, bioinformatics courses are increasingly being incorporated into different study paths.

Pathogen detection in RNA-seq data with Pathonoia - BMC Bioinformatics

Background Bacterial and viral infections may cause or exacerbate various human diseases and to detect microbes in tissue, one method of choice is RNA sequencing.

Matreex: compact and interactive visualisation of large gene families provides evidence for loss of intraflagellar transport in a myxozoan

Studying gene family evolution strongly benefits from insightful visualisations. However, the ever-growing number of sequenced genomes is leading to increasingly larger gene families, which challenges existing gene tree visualisations.

High-resolution metagenomic reconstruction of the freshwater spring bloom - Microbiome

Background The phytoplankton spring bloom in freshwater habitats is a complex, recurring, and dynamic ecological spectacle that unfolds at multiple biological scales.

Bioinformatician / Postdoc (m/f/d)

The MPI-CBG is looking for a Bioinformatician (m/f/d)

NCBI Minute: Using BLAST Well

Presented October 3, 2018. In this webinar, the NCBI BLAST team lead will show you how to be more effective with NCBI’s standalone BLAST applications. You wi...

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