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Items tagged with: evolution


Did you ever wonder about the physiological, ecological, and evolutionary consequences of a low energy-yielding metabolism in anaerobic eukaryotes? I attempted to provide an answer in this essay: https://rdcu.be/c3xJa
#eukaryotes #protists #evolution #anaerobes #mitochondria


Fascinating study on #genome #evolution :

Scaling of Protein Function Across the Tree of Life

"The abundance of functional categories in a given genome scales with genome size, suggesting that universal constraints shape category abundance. Here we look across the tree of life to understand how genome evolution may be related to functional scaling. "

https://www.biorxiv.org/content/10.1101/2023.03.08.531481v1.abstract

#genomics #microbiology


The Impact of Sample Size and Population History on Observed Mutational Spectra: A Case Study in Human and Chimpanzee Populations https://doi.org/10.1093/gbe/evad019 #science #evolution #biology #genome #SciComm #evolgen_paper


Influenza A virus coinfection dynamics are shaped by distinct virus-virus interactions within and between cells

https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1010978

#viruses #evolution


Happy 35th birthay to the #LTEE! 🎂 🎼 Started #OTD in 1988 at UC-Irvine, raised at #MSU, now residing at UT-Austin in Jeff Barrick's lab and approaching 77,000 generations!!
#evolution #science #microbiology #experiments #time #TimeTravel


PHYLOPIC 2.0 HAS BEEN OFFICIALLY RELEASED! Check out the new, faster, more useful version here, with 6320 free silhouettes (and counting): https://www.phylopic.org
#sciart #science #evolution #evolutionarybiology #phylogenetics #illustration #viz #art #visualization #biology


Is there a kid in your life that you hope to indoctrinate with a love of ecology or evolution? Check our our team's recommendations for recent children's books on these themes! https://rdcu.be/c46kj
#childrensbooks #kidlit #reading #science #ecology #Evolution


Homology of DNA import systems in #archaea to the #conjugation transport systems in #bacteria.

New research in Nature Communications on: https://www.nature.com/articles/s41467-023-36349-8

#microbiology #HorizontalGeneTransfer #evolution


Decades-old #crustaceans coaxed from lake mud give up genetic secrets revealing #evolution in action
https://phys.org/news/2023-02-decades-old-crustaceans-coaxed-lake-mud.html

Resurrection #genomics provides molecular and phenotypic evidence of rapid adaptation to #salinization in a keystone aquatic species https://www.pnas.org/doi/10.1073/pnas.2217276120

They revived decades-old #Daphnia resting eggs from lake sediments. Tanners Lake has suffered significant salt #pollution, stemming from the widespread use of road deicing salts in its watershed.


RT @PLOSBiology
In another Perspective, @RokasLab & @jlsteenwyk look at the effect that relaxed phylogenetics (first published in #PLOSBiology in 2006 by @alexeidrummond &co) has had on the field of #evolution https://plos.io/3XW1AEu
4/4


Re-reading a excellent paper by @ariskatzourakis on Maverick/Polinton mobile elements:

Phylogenomics of the Maverick Virus-Like Mobile Genetic Elements of Vertebrates

Nicely underscores the emerging importance of large DNA transposons/EVEs in eukaryotic evolution

"We conclude that vertebrate Mavericks form an ancient lineage of aquatic dsDNA viruses which are probably still functional in some vertebrate lineages."

https://academic.oup.com/mbe/article/38/5/1731/6108104

#transposons #genetics #evolution


Super interesting paper that analayzes one of the #LTEE populations that evolved stably coexisting #ecotypes from Joao Ascensao, Kelly Wetmore, Ben Good, Adam Arkin & Oskar Hallatschek. https://www.nature.com/articles/s41467-022-35677-5
#Microbiology #Evolution #ExperimentalEvolution #EcoEvo #popgen #PopulationDynamics #Genomics


Content warning: Published Science. Symbiosis in beetles


RT @BockLab@twitter.com

Our “epigenetic zoo” is finally published! DNA methylation profiles for 580 animal species and 2443 tissue samples provide an evolutionary perspective on the epigenome.
Full paper: https://www.nature.com/articles/s41467-022-34828-y (open access) #epigenome #evolution #crossspecies #epigenetics [1/9]

🐦🔗: https://twitter.com/BockLab/status/1614959481284067328


Current advances in primate genomics: novel approaches for understanding evolution and disease

https://www.nature.com/articles/s41576-022-00554-w

#genomics #genetics #evolution


Reading up on the role of transposons in genome evolution, and finding this classic review from a few years ago very helpful:

Ten things you should know about transposable elements

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1577-z

#genomics #transposons #evolution #genetics


"In light of this development, there has clearly been a paradigm shift away from the sexual stereotypes dominating the early era of sexual selection research towards a more nuanced viewpoint acknowledging that females can be subject to sexual selection too. This progress was substantially fostered by the rise of molecular paternity analyses in the early 1990s revealing that females of many putatively monogamous species are actually polyandrous [25]—also called the “polyandry revolution” [26], which spurred the quest for understanding the adaptive significance of multiple mating from a female perspective."

#Evolution #EvolutionaryBiology #SexualSelection

https://journals.plos.org/plosbiology/article?id=10.1371%2Fjournal.pbio.3001916&utm_source=dlvr.it&utm_medium=twitter


Did you miss our round-up of #ecology & #evolution content published in our journals this year? Browse the collection and consider submitting your work today!

https://www.embopress.org/page/collections/evolution-ecology-2022

@embojournal @emboreports @MolSystBiol @EmboMolMed Illustration © SciStories LLC


Happy to announce this #preprint , the culmination of last 10 years. 🥳

We find that #antimicrobialpeptides are evolved to control specific #microbiome #bacteria. This example is a textbook case of host #immune #evolution being shaped by the microbiome 🦠 which depends on host #ecology.

Thanks for comments! Bit of an experiment: we are posting pre-submit to get feedback 🙂.

https://www.biorxiv.org/content/10.1101/2022.12.23.521774v2.full
#immunity #Drosophila #EvolutionaryBiology #inflammation #NFkB


When I started my lab a few years ago I started building up an in-house library for students. Two of the first books I bought are The Logic of Chance (Eugene Koonin) and The Origins of Genome Architecture (Michael Lynch). Both are remarkable books that discuss genomics in the context of microbial diversity and the tree of life.

What other genomics/evolution classics do people always keep around?

#genomics #bioinformatics #evolution #microbiology


Still one of my favorite science music videos of all time. That and "The Molecular Shape of You" is some of the best sci-comms I have ever seen. Zero infantalization and rewarding on all levels.

#evodevo #scicomm #evolution

https://youtu.be/ydqReeTV_vk


This article is a good overview of some of the problems with neo-darwinism: https://www.panspermia.org/neodarw.htm

Darwin, as mentioned before, might himself have accepted the results that Dr. Hahn discovered and personally presented to him.

Yet, we continue to ignore the most logical interpretation of the evidence to the detriment of scientific progress.

#science #evolution #meteorite

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